PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03685
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 326aa    MW: 36682.2 Da    PI: 6.1943
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03685genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.18e-15128207191
      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
               +fY+e+A+  GF ++k++s+k+   + +   ++ C ++ k+++++          +++r +C+a+++  +e++g w+v+k++++HnH+l p
  OIT03685 128 DFYKEHARLSGFCIVKRTSNKK-GGDIVRYVQYGCDRSRKPRNKH----------VTKRKNCRARINEILEENGSWRVSKVVKKHNHQLEP 207
               6****************99998.66668999*****998887765..........5599*********9*******************975 PP
2B332.71.3e-102483121990
               -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
        B3  19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                k+f+   g+ ++ s++ +l+  +g++W+v+l  + ++ r  l +GWk+F  +n+Lk g +++F+l++ +++
  OIT03685 248 LKRFC---GYLPPISVKTMLR-CNGKEWDVTL--K-SGVRRRLVNGWKQFIVENNLKKGNVLLFELVEATSG 312
               55565...4445666665555.59********..3.333446889********************9987666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MNTNRETSLD PLNPNNSLET RSDQLRNALH ISLGLNSDDS LMNEDESIDI DSDGNFNDGE  60
NPVDDAAAPA ATAAAADDDD DDDYDGHYLE EEGEVGEDRE MPNEFNEEDL IIGPITGMRF  120
SSKDVLFDFY KEHARLSGFC IVKRTSNKKG GDIVRYVQYG CDRSRKPRNK HVTKRKNCRA  180
RINEILEENG SWRVSKVVKK HNHQLEPALS RLMAGHRSLS KSLKRTLAAK DIAGLRPSKN  240
IRVAEFILKR FCGYLPPISV KTMLRCNGKE WDVTLKSGVR RRLVNGWKQF IVENNLKKGN  300
VLLFELVEAT SGVVIFSVEE LGLTNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.12e-10FAR1 family protein