PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03375

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 405aa MW: 46391.8 Da PI: 8.8582

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03375	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.5	1.3e-06	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ sF r nL+ H r+H OIT03375 58 YVCEICNLSFQREQNLQMHRRRH 80 9*********************9 PP
2	zf-C2H2	16.7	2e-05	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k Hi+t+ OIT03375 140 WVCQKCSKGYAVQSDYKAHIKTC 162 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MLASHSFLFP AAPSHSEPFS SPENGFIIKR KRRPAGTPDP DAQVVYLTAE MLMESDRYVC 60 EICNLSFQRE QNLQMHRRRH KVPWKLKKKE EEKNEMEQVK KRVYVCPEPS CVHHDPSHAL 120 GDLVGIKKHF RRKHSNYKQW VCQKCSKGYA VQSDYKAHIK TCGTRGHSCD CGRVFSRVET 180 FIEHQDSCKA QGTTTSKECD VQKPKPAQYF SNYSNSRMPK NITHPNLELE LFTSSNYNQN 240 THNYSSFLEN EQTPQLNLSF GGQSDSSNYY QVQHTEKAAA LIIEDTTIQV SKLKSEAKEI 300 LKIAMEEKAM AAEKRQEAKC LIELANLEMA KAREIRQQLL AEYSTVQLLK DCAEMKIVGS 360 QSHVKIITCN SCNSKQFQTV AKEAAVCREV YPALTKYLSS SIYRR

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MLASHSFLFP AAPSHSEPFS SPENGFIIKR KRRPAGTPDP DAQVVYLTAE MLMESDRYVC  60
EICNLSFQRE QNLQMHRRRH KVPWKLKKKE EEKNEMEQVK KRVYVCPEPS CVHHDPSHAL  120
GDLVGIKKHF RRKHSNYKQW VCQKCSKGYA VQSDYKAHIK TCGTRGHSCD CGRVFSRVET  180
FIEHQDSCKA QGTTTSKECD VQKPKPAQYF SNYSNSRMPK NITHPNLELE LFTSSNYNQN  240
THNYSSFLEN EQTPQLNLSF GGQSDSSNYY QVQHTEKAAA LIIEDTTIQV SKLKSEAKEI  300
LKIAMEEKAM AAEKRQEAKC LIELANLEMA KAREIRQQLL AEYSTVQLLK DCAEMKIVGS  360
QSHVKIITCN SCNSKQFQTV AKEAAVCREV YPALTKYLSS SIYRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	34	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	3e-93	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT03375