PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03372
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 268aa    MW: 30532.2 Da    PI: 7.624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03372genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.7e-12100152155
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +++ h  +Er RR+++ + +  Lr+llP  +   ++K s ++  + Av+YI++Lq
  OIT03372 100 KKVVHRNVERHRRQEMANLLTSLRSLLPLEF--IKGKRSASDHMQIAVNYIRHLQ 152
               6788*************************65..*********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MDNYLWEIFT SKQNIEQDHD HHHQLLQIPN FQLNGFCQQD QIPNQDLICG PQEISSVNSN  60
NNYASVPTTT SSVNRSNLDN TNKGLIRRQE STISGNEDSK KVVHRNVERH RRQEMANLLT  120
SLRSLLPLEF IKGKRSASDH MQIAVNYIRH LQKNTKELDN RRKQIKNSLD NLGAENGSSS  180
TSYVHNNSVI VNTCQDGMEI LINANSHKEE MFPLSKVLRW LLQEGLNVVS CVNSKQDEWT  240
LIRIQCQVSD ISSVSAVGLQ KKLTDLIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-26bHLH family protein