PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03368

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 421aa MW: 46160.9 Da PI: 9.4152

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03368	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	188	210	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F ++ L++H + H OIT03368 188 TCHKCGEQFGKWEALESHHLSkH 210 7*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MGEKKNMPAV WFSLKRSLHC KSEPSDVHDP KTKKQLSTIL TRKGGGGGSR SGCSRSIANL 60 KDVIHGSKRH IEKPPSCSPR SIGSSEFLNP ITHEVILSNS RCELKITSFN GFQESSPSST 120 FVGTLRPGTP GPGGNPTMHY FNSGCRNSVA TPTRRSASFL VDKEGSFPCK TTRHSLDNDV 180 NGTSSGVTCH KCGEQFGKWE ALESHHLSKH AVSELLEGDS SRKIVEIICR SSWLKSESHV 240 GRIERVLKVH NTQKTLARFE EYREMVKIKA SKLPKKHPRC IADGNELLRF YGTTLACGVG 300 MNGTCSLCVS DKCCVCRIIR NGFTTRKELK GGIGVFTTST SARAYECIEL SEDDPSLRKA 360 LIVCRVVAGR VHRPLENIQE MAGQTGFDSL AGKVGVYSNI EELYLLNPRA LLPCFVVICK 420 A

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MGEKKNMPAV WFSLKRSLHC KSEPSDVHDP KTKKQLSTIL TRKGGGGGSR SGCSRSIANL  60
KDVIHGSKRH IEKPPSCSPR SIGSSEFLNP ITHEVILSNS RCELKITSFN GFQESSPSST  120
FVGTLRPGTP GPGGNPTMHY FNSGCRNSVA TPTRRSASFL VDKEGSFPCK TTRHSLDNDV  180
NGTSSGVTCH KCGEQFGKWE ALESHHLSKH AVSELLEGDS SRKIVEIICR SSWLKSESHV  240
GRIERVLKVH NTQKTLARFE EYREMVKIKA SKLPKKHPRC IADGNELLRF YGTTLACGVG  300
MNGTCSLCVS DKCCVCRIIR NGFTTRKELK GGIGVFTTST SARAYECIEL SEDDPSLRKA  360
LIVCRVVAGR VHRPLENIQE MAGQTGFDSL AGKVGVYSNI EELYLLNPRA LLPCFVVICK  420
A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-174	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT03368