PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03313
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 146aa    MW: 15808.2 Da    PI: 8.7646
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03313genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.81e-161258248
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
              +i     r vtfskRr+g++KKA EL  +++a+va i+fs+tgk y+
  OIT03313 12 QIMKAASRMVTFSKRRKGLFKKALELESMTGARVAAIVFSPTGKPYT 58
              56677889***********************************9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    
MGTGKKKIEI KQIMKAASRM VTFSKRRKGL FKKALELESM TGARVAAIVF SPTGKPYTCG  60
NVSSAIGRHF SSSIDPSSGC GDVSSGSSGS RSTPSKNGLC KWLENIDVEE CENLTELLLL  120
KEQLEGTREK LACMEDSESF LALFMS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.15e-17M-type_MADS family protein