PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03169
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 523aa    MW: 58101.3 Da    PI: 5.1359
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03169genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.94.2e-1281545232374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               +elLl+cAeavs+  + +a+ l++ l++ +s +g+pmqRl ay++e+++arl++s+s +yk+l+++e +    se l++++++++++P++kf++  aN  I
  OIT03169 154 KELLLACAEAVSDAYFPAAEVLMNVLEQKVSVSGEPMQRLSAYMLEGIRARLFSSGSIIYKKLKCKEPT---NSELLSYMQVLYHICPYYKFAYTSANVVI 251
               689*****************************************************************9...89*************************** PP

      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                e + +e+r+HiiDf+i qG QW+ L+q+La Rp+gpps+RiTgv++++s   +   l+ +gerLak+Ae+++vpfefn+ +a + +++ele+L +++gEa
  OIT03169 252 DEVMTNENRIHIIDFQIAQGSQWMFLIQSLARRPGGPPSVRITGVDDSQSAhaRGGGLQLVGERLAKVAESCRVPFEFNA-AAISGSEVELENLYIRHGEA 351
               ***********************************************9988889999***********************.8999**************** PP

      GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
               laVn+ + lh+++desvs+ ++rd++L+lvkslsPk+v++veqe+++n++ F+ rf e+l+yy+a+f+s++a+ pr++++ri+ E+++++r++vn++aceg
  OIT03169 352 LAVNFPYILHHMPDESVSTVNHRDRLLRLVKSLSPKIVTLVEQESNTNTAAFVPRFRETLDYYTAMFESIDAGRPRDDKQRISAEEHCVARDVVNIIACEG 452
               ***************************************************************************************************** PP

      GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               a+r+erhe ++kW++rl++aGF+p +ls ++ + ++ +l+ ++s+ yr+ e++g+l+lgWk+r+L ++SaWr
  OIT03169 453 ADRVERHELFGKWSMRLKMAGFTPCSLSPSVGEAINDMLKDYSSN-YRIAESKGALYLGWKNRALATTSAWR 523
               *******************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    
MQASQRLMDK VEQYYSPYYV FNNSNDTSSS GTQFSFQSQN EQFFTLDSLP AAGYVIYDSP  60
PAVSVSSNWS PFSPQYSQST ISDQHHSSDN TYGSPLSGCS GVDGVLSEMA SKLLGPESDI  120
DDSSSCSFND VASEPSSLTK WNRVLEIASS LDVKELLLAC AEAVSDAYFP AAEVLMNVLE  180
QKVSVSGEPM QRLSAYMLEG IRARLFSSGS IIYKKLKCKE PTNSELLSYM QVLYHICPYY  240
KFAYTSANVV IDEVMTNENR IHIIDFQIAQ GSQWMFLIQS LARRPGGPPS VRITGVDDSQ  300
SAHARGGGLQ LVGERLAKVA ESCRVPFEFN AAAISGSEVE LENLYIRHGE ALAVNFPYIL  360
HHMPDESVST VNHRDRLLRL VKSLSPKIVT LVEQESNTNT AAFVPRFRET LDYYTAMFES  420
IDAGRPRDDK QRISAEEHCV ARDVVNIIAC EGADRVERHE LFGKWSMRLK MAGFTPCSLS  480
PSVGEAINDM LKDYSSNYRI AESKGALYLG WKNRALATTS AWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein