PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OIT03094 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 236aa MW: 27108.3 Da PI: 8.4807 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++++G ++W++ +r g+ R++k+c++rw +yl OIT03094 14 KGPWTAEEDQILISFIQRYGHENWRALPRQAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.7 | 5.6e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e ++++++ lG++ W++Ia++++ gRt++++k++w+++l OIT03094 67 RGNFSKEEEETIIKLHQVLGNR-WSAIASRLP-GRTDNEVKNFWHTHL 112 89********************.*********.************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence |
MVRAPCCERM GLKKGPWTAE EDQILISFIQ RYGHENWRAL PRQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF SKEEEETIIK LHQVLGNRWS AIASRLPGRT DNEVKNFWHT HLKKRSEHNY 120 LLPSTTTTKR SSHDMMIPKR TTNVSQKINH HIIASNYQAS QNIVTYHPTC DVEDLQENNS 180 SSYSESTQSN KEESMQSING ENIGTESANG HGDTSFSNDM VFWYNIFMGA GTISES |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 128 | 135 | TKRSSHDM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23250.1 | 8e-75 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OIT03094 |