PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03073

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 339aa MW: 38638.7 Da PI: 7.1943

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03073	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+l + ++++G g+W++ ++ g++R++k+c++rw +yl OIT03073 14 KGPWTSEEDEKLSNFINKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.4	1.4e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l OIT03073 67 RGKFSQEEEQTILNLHAVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MGRSPCCDEN GLKKGPWTSE EDEKLSNFIN KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILN LHAVLGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 YDPMTHRPRT DIFNSLQHLI ALANLKELME HQYLQNLLQP HNISFGTSIQ NMEAYNLLNS 180 LSSLKDSQFL GTNNHLENHL ISTPNSNLQA IQDLIPFSHL PELQTSCSFQ NSLNKDKVRP 240 QNTDFITVLS HGETSSPTSP WLPSSLSPSP PCLPVTNDIR RKENSLEVVM SSCLPEERKL 300 PDYLFQPDSE RSLNNEGAPP SIWPDLLLED SFFHDIPKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	3e-94	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT03073