PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT02910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YC | ||||||||
Protein Properties | Length: 228aa MW: 25158.2 Da PI: 5.0144 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.7 | 1.1e-55 | 38 | 142 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ql++fw++q ie+a+df+nh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdivpr OIT02910 38 QLQMFWTYQrqeIEQANDFRNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 138 89*****998899**************************************************************************************** PP NF-YC 99 delk 102 de+k OIT02910 139 DEIK 142 *975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MDNNPHQSPT AAAAAAAQSA PYPQQTPYHH LLQQQQQQLQ MFWTYQRQEI EQANDFRNHQ 60 LPLARIKKIM KADEDVRMIS AEAPILFAKA CELFILELTI RSWLHAEENK RRTLQKNDIA 120 AAITRTDIFD FLVDIVPRDE IKDESGVVGL GTGMVGPSAS GVPYYYPPLG QPTPPGGVMM 180 GRPAAMAGVD PSAFYSQPPS QAWQWQTTED NSYASGGSSG QGNLDGQT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 1e-102 | NF-YC family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT02910 |