PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT02910

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 228aa MW: 25158.2 Da PI: 5.0144

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT02910	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.7	1.1e-55	38	142	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ql++fw++q ie+a+df+nh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdivpr OIT02910 38 QLQMFWTYQrqeIEQANDFRNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 138 89***998899************************************************************************************** PP NF-YC 99 delk 102 de+k OIT02910 139 DEIK 142 *975 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MDNNPHQSPT AAAAAAAQSA PYPQQTPYHH LLQQQQQQLQ MFWTYQRQEI EQANDFRNHQ 60 LPLARIKKIM KADEDVRMIS AEAPILFAKA CELFILELTI RSWLHAEENK RRTLQKNDIA 120 AAITRTDIFD FLVDIVPRDE IKDESGVVGL GTGMVGPSAS GVPYYYPPLG QPTPPGGVMM 180 GRPAAMAGVD PSAFYSQPPS QAWQWQTTED NSYASGGSSG QGNLDGQT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-102	NF-YC family protein

Link Out ? help Back to Top
Ensembl	OIT02910