PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT02876
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 418aa    MW: 46797.6 Da    PI: 8.8539
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT02876genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68e-122012401155
               HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               rRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  OIT02876 201 RRRDRINEKMKALQKLVPNA-----SKTDKASMLDEVIKYLKQLQ 240
               8******************9.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    
MSHNWNHRQQ RQEQTVELPE EENRYPHVHN QQPQNHLVPM SKCEVAELTW ENGQLAMHRL  60
GNNLPNEQTK HTWERASDTL ESVVHQATNC QKQNLDLKGS DKNKANINTE NIVKQETIGG  120
VVKKRMRSDS DPQLYGTSGR LVGEYHKNIF DHQNAEPSAS ASVRDTVMTW PNYHSLDESS  180
RSFKSRATFN EDSACHIAGL RRRDRINEKM KALQKLVPNA SKTDKASMLD EVIKYLKQLQ  240
AQIQLISSAR NMESQMMMQL SLGMQLPHIQ MPLLARMGTG VNLDMTSGML NNMTANLARA  300
AAAAATTPHQ SLNAPFIYPT SIATSCPPFM SPAYAMAPTI PTPPQANGDA SASRAAVAPS  360
VSNSFPFNDP RSAFLAQSMN MEFNNQLAAQ YMQQANNQSM QTRNKNLNQG NLNQRQTE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-28bHLH family protein