PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT02296
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 238aa    MW: 27661 Da    PI: 7.6118
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT02296genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-15956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv +vk++G ++W+  a+  g++Rt+k+c++rw +yl
         OIT02296  9 KGPWTEQEDVQLVFYVKMFGDRRWDFLAKVSGLKRTGKSCRLRWVNYL 56
                     79********************************************97 PP
2Myb_DNA-binding55.71.1e-1762107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l ++++ ++G++ W++Ia +++ gRt++++k++w++++
         OIT02296  62 RGKMTPQEEHLVLQLHSKYGNR-WSKIAGKLP-GRTDNEIKNYWRTHM 107
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MVQEEIIRKG PWTEQEDVQL VFYVKMFGDR RWDFLAKVSG LKRTGKSCRL RWVNYLNPAL  60
KRGKMTPQEE HLVLQLHSKY GNRWSKIAGK LPGRTDNEIK NYWRTHMRKQ AQDQRNKNKA  120
SISPSSSFSN SSSNSSANSP TVDSMPVNEQ NERNSNGVLE HLQLAAGENK VYDHELGEKN  180
MMVYSIDDIW KDVQSSEDTD QTMNKLPVMA SPLWDYCPDS LWMTDYYYDN QDISFFTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.13e-71MYB family protein