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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT02150 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 274aa MW: 30584.1 Da PI: 6.1174 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 58.3 | 1.7e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++ +v++ ++fdfl ++v +
OIT02150 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 86
5789************************************************************************99976 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 274 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLRRGAK 60 TVNSLHLKHC VQSYNVFDFL REVVSKVPDY GHSDAAGEMP KRRKVAMEEH HDSEDEFKRS 120 RTETCHASSS GRGRGRGRGR GRGRGRADRE LSRPDMQLES CTSLQQSGQQ NPNPGTQTES 180 CAEPKGSPKQ DSIACDRESS VITTPNLKVN VDESVDKSAA PDIAACNASP RPANEKVEEG 240 PQWSLEMERM VIDPTHMSHL NSSLAEEEED YDEE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 132 | 141 | RGRGRGRGRG |
| 2 | 132 | 142 | RGRGRGRGRGR |
| 3 | 134 | 143 | RGRGRGRGRG |
| 4 | 134 | 144 | RGRGRGRGRGR |
| 5 | 136 | 145 | RGRGRGRGRG |
| 6 | 136 | 146 | RGRGRGRGRGR |
| 7 | 138 | 147 | RGRGRGRGRG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 7e-66 | NF-YC family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT02150 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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