PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT02009

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 1009aa MW: 112689 Da PI: 6.8009

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT02009	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	918	941	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F+++ + +H+r+H OIT02009 918 RCPieGCGKKFTSHKYALVHQRVH 941 69999*****************99 PP
2	zf-C2H2	11.3	0.001	977	1003	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg +F+ s++ rH r+ H OIT02009 977 YKCKveGCGLTFRFVSDYSRHRRKtgH 1003 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1009 aa Download sequence
MTQTWPLGFN CGEAANFGTP QWLTVAKEAA VRRAAMNYLP MLSHQQLLYL LTMSFVSSVP 60 RSLLPGVRTS RLRDRQKEEK ELLVKKAFLE DIEKENDLVK VLLQKSFSDN AVLWDVDMLP 120 SSGKESELHK HASVDASRGN DQSDNINSQD LLDQMSLYMD NYSDFYVDDD VSCDFEIDSG 180 TLPCIACGIL GFPFMALVQP SKKAAEHLFP EDFQNKQDSG AVKHVESDCH SDLRGMIEDY 240 NRVDRMERNG GHFLNHDEVS LSSQPSESAV TPHEGQTSQS HNPSHTDNAA LTSKIELEKE 300 WDFCTSFVRP RIFCLEHAIQ TEELLRTKGG ANVLVICHSD FQKIRSHATI VAEEIGTTFK 360 YNEISLANAS QGHLSLIDLA IVDEEQDKCT EDWTLKLNIN LRHCVKVQKN CPLKKLKHAL 420 TLGGLFSDST LSSESSSLKW QSRKVRSKRK SNNSTESPPF ANVQIAKVLD SGSTVGRQNA 480 RKGNITIQYS RKKYKSKACS CAEVTRAFVD PFNALTEEVL LTDAKTLGSS TLIRDEIAGT 540 ASSGERFFAS SEGKPGVHHE HEMLLVNRDQ NGNLLVSQEA DLLITSSIMV EFNEAQAEIC 600 TTEKFSMEKT CHTNSNNRHA EHKTTAPEIS GETEVAHVNT LACTTIPVVR STSTNENLRE 660 NQDMTESGIR NKSAHPREAD FERDHHGEAD KAIMTRSPVP VNSSGSCTDG PSRSCDEQIE 720 DQSPEQSGSG SEASDNETSD NSVEQKIQID NADQGIAVSD HVTPVEEASA SAESLKVTRE 780 TSSPKHSQSG DNISERHKKE SKDDTSPIVS RPIAKSGGKR RRELELLTYD GCKFDGFVKS 840 PCEGLRPRAR KNVLGSGVES KEPLEDKPMG KKVKTSLPSS ITHKDKKEQR KGTHRCDLEG 900 CRMSFQTKVE LQLHKRNRCP IEGCGKKFTS HKYALVHQRV HENDRPLRCP WKGCTMTFKW 960 AWARTEHLRV HTGERPYKCK VEGCGLTFRF VSDYSRHRRK TGHYVEAAN

Sequence ? help Back to Top

Protein Sequence Length: 1009 aa Download sequence

MTQTWPLGFN CGEAANFGTP QWLTVAKEAA VRRAAMNYLP MLSHQQLLYL LTMSFVSSVP  60
RSLLPGVRTS RLRDRQKEEK ELLVKKAFLE DIEKENDLVK VLLQKSFSDN AVLWDVDMLP  120
SSGKESELHK HASVDASRGN DQSDNINSQD LLDQMSLYMD NYSDFYVDDD VSCDFEIDSG  180
TLPCIACGIL GFPFMALVQP SKKAAEHLFP EDFQNKQDSG AVKHVESDCH SDLRGMIEDY  240
NRVDRMERNG GHFLNHDEVS LSSQPSESAV TPHEGQTSQS HNPSHTDNAA LTSKIELEKE  300
WDFCTSFVRP RIFCLEHAIQ TEELLRTKGG ANVLVICHSD FQKIRSHATI VAEEIGTTFK  360
YNEISLANAS QGHLSLIDLA IVDEEQDKCT EDWTLKLNIN LRHCVKVQKN CPLKKLKHAL  420
TLGGLFSDST LSSESSSLKW QSRKVRSKRK SNNSTESPPF ANVQIAKVLD SGSTVGRQNA  480
RKGNITIQYS RKKYKSKACS CAEVTRAFVD PFNALTEEVL LTDAKTLGSS TLIRDEIAGT  540
ASSGERFFAS SEGKPGVHHE HEMLLVNRDQ NGNLLVSQEA DLLITSSIMV EFNEAQAEIC  600
TTEKFSMEKT CHTNSNNRHA EHKTTAPEIS GETEVAHVNT LACTTIPVVR STSTNENLRE  660
NQDMTESGIR NKSAHPREAD FERDHHGEAD KAIMTRSPVP VNSSGSCTDG PSRSCDEQIE  720
DQSPEQSGSG SEASDNETSD NSVEQKIQID NADQGIAVSD HVTPVEEASA SAESLKVTRE  780
TSSPKHSQSG DNISERHKKE SKDDTSPIVS RPIAKSGGKR RRELELLTYD GCKFDGFVKS  840
PCEGLRPRAR KNVLGSGVES KEPLEDKPMG KKVKTSLPSS ITHKDKKEQR KGTHRCDLEG  900
CRMSFQTKVE LQLHKRNRCP IEGCGKKFTS HKYALVHQRV HENDRPLRCP WKGCTMTFKW  960
AWARTEHLRV HTGERPYKCK VEGCGLTFRF VSDYSRHRRK TGHYVEAAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	3e-70	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT02009