PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01888
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 749aa    MW: 82719 Da    PI: 5.27
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01888genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.9e-1957112156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +rk  ++t++q+ eLe++F++n++p+++ r eL kkl+++ +qVk+WFqNrR+++k
  OIT01888  57 KRKYSRHTANQILELETAFKENPHPNEKVRLELGKKLSMDSKQVKFWFQNRRTQMK 112
               79999************************************************998 PP
2START166.42e-522624842205
               HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT. CS
     START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg. 88 
               la++a++el+ +a+ +ep+Wv+s     e +n +e+ ++f++  +     + +ea ra+g v+ ++ +lve+l+d + +W e++     k ++++vi    
  OIT01888 262 LALAAMNELLGLAEIGEPLWVRSLdgggETLNLEEYARSFTPCTGmkpghFATEATRATGTVIVNSLTLVETLMDMS-RWVEMFScivgKTSVVNVIPGSt 361
               6899************************************99888999999**************************.*******************9999 PP

               .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
     START  89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                    + lql+++e+q +s lvp R+  f+R+++q+ +g+w++vdvSvd  q+ ++  ++  +++lpSg+++++++ng+skvtw+eh+++ ++++h l+r+
  OIT01888 362 cgswsSNLQLIQTEFQIISDLVPaREMKFLRFCKQHAEGVWAVVDVSVDTIQESSQPREIGNCRKLPSGCIVQDMPNGYSKVTWIEHMEYYENVVHHLYRP 462
               **************************************************999998899****************************************** PP

               HHHHHHHHHHHHHHHHTXXXXX CS
     START 184 lvksglaegaktwvatlqrqce 205
               lv++gl +ga++w+atlqrq e
  OIT01888 463 LVRNGLGFGAQRWMATLQRQSE 484
               *******************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    
MESHSDMSEK GESSNNVVMG RPKEEDESES RFNGDNFLNG VASEDEPDSV LSNSSRKRKY  60
SRHTANQILE LETAFKENPH PNEKVRLELG KKLSMDSKQV KFWFQNRRTQ MKSQLERHEN  120
GMLKQENDRL RIEHIAMQEA MKHPICNRCR SQAIIADINV EEHQTKIEHE RLKEEVKRIS  180
VLADKLLGPL SSLEGSMASV IANPAFGLPE GINGFGGINY ANAASPMGLD FENGLSSTPP  240
VIISTSLANV DVSYDKSMLM DLALAAMNEL LGLAEIGEPL WVRSLDGGGE TLNLEEYARS  300
FTPCTGMKPG HFATEATRAT GTVIVNSLTL VETLMDMSRW VEMFSCIVGK TSVVNVIPGS  360
TCGSWSSNLQ LIQTEFQIIS DLVPAREMKF LRFCKQHAEG VWAVVDVSVD TIQESSQPRE  420
IGNCRKLPSG CIVQDMPNGY SKVTWIEHME YYENVVHHLY RPLVRNGLGF GAQRWMATLQ  480
RQSEFVAMLM SSVDTPVVCS SGQTSMAMLA QRMTRNFCAG VCATIHKWES IQQANGEDAK  540
LMMRKNIGDP GEPIGVVLSA TKTIWLPVKQ QRLLDFLLNE QTRTQWDILF KSGPMQQMVH  600
IAKGQNIDNS ISLFRANGDA ISDSENNMLI LQDTCTDATG SLIVYATIDA ADMDVVMNGG  660
DSSSVAFLPS GIAIVPDCFQ DYTGANNCDI GTSWEKDNGF SGTGSLVTIG FQVLVNSSPA  720
EKLSMESVQK VNNLISHTIH GIKAAFKSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein