PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01874

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 321aa MW: 36127.4 Da PI: 10.5468

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01874	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	57	77	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k Fs+ L H+r H OIT01874 57 CHVCNKGFSSGKALGGHMRIH 77 *******************99 PP
2	zf-C2H2	16.2	3e-05	129	148	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C++Cgk F +k +L H+r OIT01874 129 TCSICGKKFASKKSLFGHMR 148 7******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MVDKQEHRSI LKGRGIGTLW VKVKIPKEEQ VIEDHDYKDE DKVQIQRKNN TPSRNICHVC 60 NKGFSSGKAL GGHMRIHAQP AANKGIKKRK GLLDQPIPLF NKRKLQMKQQ EVDILRKKKM 120 GRNQRPPITC SICGKKFASK KSLFGHMRCH PDRDWRGIHP PPTDLSKAVG SWSVTAKRGR 180 RTNSSSSSSE EEQLRDGVHY LMLLAHGHSL KDTGKLETMN SNYKTADEAD HLVSITKKST 240 ICRPIKKRMK KLKDLGSIQD VSIYNTVIST AATSSSTNNI TTTMDDHEPQ LSSSSQISCV 300 RNNNTSSRIL DFDLNELPLP S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	108	KKRKGLLDQPIPLFNKRKLQMK
2	102	119	KRKLQMKQQEVDILRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	3e-20	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT01874