PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01743
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 288aa    MW: 31655.4 Da    PI: 9.2915
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01743genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK64.41.8e-202673350
    RWP-RK  3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50
              k+is++++sk F+lp+ dAA +Lgvc++vLK+iC ++G+ RWP+Rk+ 
  OIT01743 26 KSISFDQVSKLFNLPLSDAAESLGVCASVLKKICYENGLVRWPYRKVI 73
              79********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MSNLQGSGPI SNPIQNPTPN PSTDPKSISF DQVSKLFNLP LSDAAESLGV CASVLKKICY  60
ENGLVRWPYR KVISGKSIED IKKEASREKQ ERSVEFPKAA GEKHDSLASS AISSFPGSPL  120
QNKSISSTME MPKAGAFSQQ QGTRVAQSGS LPHFRVSNLT RGTSVSYDEF KYGFPSDGLS  180
TVTYRWWGNK SPDNNEDSQP NDDNVKNSKE QAENVAEKSE CKTSVDSMEA SSLTEVRKRA  240
AKEGKEMLRL GVYRGHRANI LDSTKQKILC QVFKSYFHVN GGMSKLES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.19e-11Nin-like family protein