PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01662
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 715aa    MW: 80177.9 Da    PI: 6.3145
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01662genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-182877756
              --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              ++ eq+++Le++F+++++p++++r++L++++gL+ +q+k+WFqN+R++ k
  OIT01662 28 HSVEQIQQLETFFKECPHPDENQRRQLSREIGLDPKQIKFWFQNKRTQTK 77
              688*******************************************9987 PP
2START111.99.4e-362404536203
               HHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT... CS
     START   6 aaqelvkkalaeepgWvkss.......esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg... 88 
               a++e v + + +ep W ks          e +++ + k+ +  +     ++e +++sgvv+m++ +l +++ld   ++ ++++    ka t+ev+++    
  OIT01662 240 ATDEIVELLQMNEPIWIKSQidgryfiNRESYEKIYPKPNQ--AyksaARIESSKESGVVTMTAIELIQIFLDPV-RYMNMFPtivtKARTIEVVDTEnfg 337
               78899999************999988888888888888855..345899**************************.66666666666**********9999 PP

               EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHH CS
     START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvks 187
               g +qlm+ +l  lsplv  Rdf f+R++rql   +w+ vdvS d+ ++ + s +   + ++pSg++i++++ng+s vtw+ehv +++++    l+r lv  
  OIT01662 338 GSVQLMYEKLHILSPLVGaRDFFFIRCCRQLDPTTWTMVDVSFDNLREIQ-SGGPSQSWKFPSGCVIQDLGNGKSMVTWLEHVYVDDKTHtNRLYRDLVCG 437
               ************************************************99.88999999***************************9998799******** PP

               HHHHHHHHHHHHTXXX CS
     START 188 glaegaktwvatlqrq 203
               ++a+gak+w  tlqr 
  OIT01662 438 RQAFGAKRWIITLQRM 453
               *************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    
MADSGNEQIG ESSSSRKRSR RQKLCNRHSV EQIQQLETFF KECPHPDENQ RRQLSREIGL  60
DPKQIKFWFQ NKRTQTKALS ERADNNTLKT ENERFHCENM AMREALKNII CPHCDGPPPG  120
EEERRRNLEK MKMANQRLRD EHERISNLIS SFVGRSFAMT SQLAPQNNVG SLSSSSDESL  180
VSQNIVGSPI ENPNNVRGNS TAIIPPPSLP PSPPPPPFEE NEEIRVDREK SIIFGTVISA  240
TDEIVELLQM NEPIWIKSQI DGRYFINRES YEKIYPKPNQ AYKSAARIES SKESGVVTMT  300
AIELIQIFLD PVRYMNMFPT IVTKARTIEV VDTENFGGSV QLMYEKLHIL SPLVGARDFF  360
FIRCCRQLDP TTWTMVDVSF DNLREIQSGG PSQSWKFPSG CVIQDLGNGK SMVTWLEHVY  420
VDDKTHTNRL YRDLVCGRQA FGAKRWIITL QRMSDRHNFA MGANNHDLGG VIGEPEGKQN  480
VMQISQRMVK SFCEILSMGD SLDFPTSSEM TNSGVRVSFR KNEDISQPKG LIVTAATSIW  540
LPLSFDTVFN FFKDDKTRTQ WDVLTNGNAV GELARIPTGF FPGNCISIIQ PYVPKENNML  600
LLQETNIDPT GAFIIYAPID LATVTSIING ADTTQIPILP SGLIISPDGR LAADRDGNGI  660
SQTGSLLTVA FQILVSANTN TNSISKQQNM EAVATVHTLL SSTVQKIKVA LDCTD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-180HD-ZIP family protein