PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT01440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 230aa MW: 26863.2 Da PI: 9.4034 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.5 | 3e-20 | 67 | 119 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+eqle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k OIT01440 67 KKRLTSEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 119 5679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.3 | 1e-38 | 66 | 157 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kk+rl++eq+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+ yd +++e+++L++ev +Lr+ lke OIT01440 66 KKKRLTSEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKSKQLERLYDSLKQDYDLVSREKQKLQNEVLALRAILKE 157 9**************************************************************************************88875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MDWNGNFRPF VSRPTPPDNS FNFLYSYNYD QYPGMEMKHA MQTQNGGVLP TMDKLNNNFA 60 MNQLDKKKRL TSEQLESLEN SFQEEIKLDP DRKMKLAKEL GLQPRQIAVW FQNRRARWKS 120 KQLERLYDSL KQDYDLVSRE KQKLQNEVLA LRAILKEQAT KKQVNSTVYT KISGEETVES 180 TSMPSSNKTR GITTSNHQNN NNNNDMAECS YVFNVNNVEG FNPVMPPYWV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 95 | KKKRLTSEQLESLENSFQEEIKLDPDRKMK |
2 | 114 | 122 | RRARWKSKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-60 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT01440 |