PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT01228 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 27979.6 Da PI: 6.519 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.4 | 1.3e-13 | 61 | 107 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN + +Lr l+P K++Ka+ L k++ +Ik+L OIT01228 61 KNHSEAERRRRERINGHLGTLRNLIPGT-----NKMDKAALLAKVISHIKDL 107 58*************************6.....5****************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence |
MEFFNSCNGF CEDYGFQGMI ANGSTSSSSL ILDNERGELV KAMVRPGEKG VNPEKALIAL 60 KNHSEAERRR RERINGHLGT LRNLIPGTNK MDKAALLAKV ISHIKDLRVN AAEATKGVLV 120 PTDIDEVCVE QQAEGSGRAT YSVKASLCCE YKHELISDLR QALDTLPLKT VRAEIATLGN 180 RMVSVFVITE GDEGNTEDNE RCQLLVTSVR QALRSVLDKF YASEEFSSRS TLSSKRQRVS 240 LLDSSSSSSL GDFW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 72 | ERRRRE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT01228 |