PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01162

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 361aa MW: 41262.1 Da PI: 9.746

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01162	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3.1e-15	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW eEd ll +vkq+G++ W++++++m+ ++R +k+c +rw +yl OIT01162 4 RQRWRSEEDALLRAYVKQYGPKEWHLVSQRMNtpLNRDAKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	36.2	1.4e-11	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + OIT01162 59 KGSLTEEEQRLVIHLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MRERQRWRSE EDALLRAYVK QYGPKEWHLV SQRMNTPLNR DAKSCLERWK NYLKPGIKKG 60 SLTEEEQRLV IHLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKENNKVVDP 120 VDEGKYDHIL ETFAEKIVKE RSVPGLLMAT SNGGFLHADA PAPTPQTLLP LWLSNSTATS 180 TVRSPSPSVT LSLSPSTVPP TPTPGIPWLQ TDRGPENAPL ILSSFPHHGV APPCGENPFV 240 TELVECCKEL DEGHRAWAAH KKEAAWRLRR VELQLESEKT SKVREKMEEI EAKMKALREE 300 QKATLDRIEA EYKEQLAGLR RDAEAKEQKL AEQWASKHLR LSKFLEQMGC QSRLAEPNGG 360 R

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MRERQRWRSE EDALLRAYVK QYGPKEWHLV SQRMNTPLNR DAKSCLERWK NYLKPGIKKG  60
SLTEEEQRLV IHLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKENNKVVDP  120
VDEGKYDHIL ETFAEKIVKE RSVPGLLMAT SNGGFLHADA PAPTPQTLLP LWLSNSTATS  180
TVRSPSPSVT LSLSPSTVPP TPTPGIPWLQ TDRGPENAPL ILSSFPHHGV APPCGENPFV  240
TELVECCKEL DEGHRAWAAH KKEAAWRLRR VELQLESEKT SKVREKMEEI EAKMKALREE  300
QKATLDRIEA EYKEQLAGLR RDAEAKEQKL AEQWASKHLR LSKFLEQMGC QSRLAEPNGG  360
R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-140	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT01162