PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01137
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 276aa    MW: 31574.4 Da    PI: 8.4123
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01137genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000145274123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              y+C+ C + F++   L  H+++H
  OIT01137 52 YTCSFCRREFRSAQALGGHMNVH 74
              9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MEQARCWMSA KRKHDITLSN HPSLYGDSWE EQAFAEDAAG ALGGCIWPPR FYTCSFCRRE  60
FRSAQALGGH MNVHRRDRAR MKQSPPSNIP SGDHQNQVFI PPHHNNSHVQ YPSHQICTFM  120
YNPNSDSDHG VLRSPNSDPL PIRVSSQKTL ATHSSFSSIV QEQNKNKLSS PPSWSNLVAD  180
KYSCLSNVKN HEEKKLKSID FKKEERNLEV IDPISRAKLD HVAITNCKRR RVDEENNTPF  240
ANLFPKTSSM ERCRPQSEAL ERIPNAIEEL DLELRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228232KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.12e-27C2H2 family protein