PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01014
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 300aa    MW: 35419.9 Da    PI: 8.1334
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01014genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.31.1e-2450132186
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               +W+ qe+++ + +r e+++++ ++k++k lWe ++ km+++g++rsp+qCk+kw+nl +ryk +++ e +     ++++p++++l+
  OIT01014  50 QWSIQETRDFLMIRAELDQTFMETKRNKLLWEVIATKMKDKGYNRSPEQCKCKWKNLVTRYKGCETLEPEA--L-RQQFPFYNELQ 132
               7********************************************************************95..3.4589*****98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MDPHLHHHHH QHQHHQQQQQ QNPFSHQSVN VDTSGGGVNI GTTSGDRFPQ WSIQETRDFL  60
MIRAELDQTF METKRNKLLW EVIATKMKDK GYNRSPEQCK CKWKNLVTRY KGCETLEPEA  120
LRQQFPFYNE LQAIFAARMQ RMLWIEAEGG GGSKKKTISQ LSSDEEEENE DSEGEKVVGI  180
TKKKRKVKGN NVNIVGSSSS GGSGNLVNSF KEILDDFMKQ QMAMEMQWLK AYEAKEEERR  240
IKEMEWRQTM EALENERLMM ERRWREREEQ RRIREEARAE KRDALITALL NKLRREDHNM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187KKKRKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-55Trihelix family protein