PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT00915

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 443aa MW: 48585.2 Da PI: 9.6704

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT00915	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	198	220	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg++F+ ++L++H+ + H OIT00915 198 ACPECGEVFPKIESLEHHQAVrH 220 6******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MKKRSSSSSS STIVLLFHFL ALLFMALLTF TPETSENTQK QPSKRRKKQQ IKQQKEKQKQ 60 PSSWDQFKNL LTCKQIENST VHDPASKNSK LGSCSSICTF RDVVHGNTRV VHRADNSPES 120 SSLGQETRIL SKNKTSHHHG QSSSSRSLAR SNGSTSSTYT TTTSSSRGMQ FRKLSGCYEC 180 HMIVDPSRHP LPRSTICACP ECGEVFPKIE SLEHHQAVRH AVSELGPEDS SRNIVEIIFK 240 SSWLKKDNPI CKIERILKVH NTKRTIQRFE DCRDAVKIHA VATGKKNPRC AADGNELLRF 300 YCTSLTCSLG ARGSSSLCGS VPSCGVCNLI RHGFQGSKTS GVRTTASSGR AHDCLGSGIA 360 KRRAMLVCRV IAGRVKQTVK DAVASPTTEE ETCSGSGLLA NGSAIYDSVA GYAGIYSNLE 420 ELYVFNPRAI LPCFVVIYEA LES

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MKKRSSSSSS STIVLLFHFL ALLFMALLTF TPETSENTQK QPSKRRKKQQ IKQQKEKQKQ  60
PSSWDQFKNL LTCKQIENST VHDPASKNSK LGSCSSICTF RDVVHGNTRV VHRADNSPES  120
SSLGQETRIL SKNKTSHHHG QSSSSRSLAR SNGSTSSTYT TTTSSSRGMQ FRKLSGCYEC  180
HMIVDPSRHP LPRSTICACP ECGEVFPKIE SLEHHQAVRH AVSELGPEDS SRNIVEIIFK  240
SSWLKKDNPI CKIERILKVH NTKRTIQRFE DCRDAVKIHA VATGKKNPRC AADGNELLRF  300
YCTSLTCSLG ARGSSSLCGS VPSCGVCNLI RHGFQGSKTS GVRTTASSGR AHDCLGSGIA  360
KRRAMLVCRV IAGRVKQTVK DAVASPTTEE ETCSGSGLLA NGSAIYDSVA GYAGIYSNLE  420
ELYVFNPRAI LPCFVVIYEA LES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-162	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT00915