PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT00789
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 753aa    MW: 82877.8 Da    PI: 5.1932
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT00789genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.19.6e-2191147157
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
               r++ +++t++q++e+e++F+k+++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  OIT00789  91 RKSYHRHTQHQIQEMENFFKKCPHPDDKQRKELSHELGLEPLQVKFWFQNKRTQMKN 147
               788999************************************************995 PP
2START179.22.5e-562774971206
               HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
     START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
               ela +a++e++++a+ +ep+W  s+      +n++e+++ f+ + +     +++ea+++++vv+ ++ +lve+l+d + +W+ ++      a t++v+s+g
  OIT00789 277 ELAVAAMEEFIQMAQMGEPLWLPSVdgrtNFLNEEEYVRLFPIGIGpklegFKTEASKDTAVVFLNPINLVEILMDAN-KWSSMFSsivsTAVTVDVLSTG 376
               57899********************9998899***********999********************************.*******999999********* PP

               ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
     START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
                     galql++ae+q++ p vp Rd +fvRy++++ +g w++vdvS+d  +  p ++s+ R   +pSg+li+ ++ng+skvtw+ehv+ ++  + ++++
  OIT00789 377 vvgnfnGALQLIFAEFQVPFPQVPtRDCYFVRYCKRSVDGIWAVVDVSLDYLRATP-TASCRR---RPSGCLIQAMPNGYSKVTWIEHVEADDIAIYNIYK 473
               ********************************************************.666666...*********************************** PP

               HHHHHHHHHHHHHHHHHTXXXXXX CS
     START 183 slvksglaegaktwvatlqrqcek 206
               +l++sgla+gak+w atl+rqce+
  OIT00789 474 PLLNSGLAFGAKRWIATLDRQCER 497
               **********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    
MNPANQFSSM IANDGNDVGF VSSSSGLPLG QQSGNIMESQ LHSLDMASNT SESKLMPLLT  60
EEEFDSKSGS HDNNQEGKSS DEQDANQPER RKSYHRHTQH QIQEMENFFK KCPHPDDKQR  120
KELSHELGLE PLQVKFWFQN KRTQMKNQNE RSELSSLRDE NEKLRTEHVQ LREALNNATS  180
CPSCPICGGP QISLGEMSYE ENQLRIENAR LKEEVDRISA LAAKYVGKPV SSLNVNYSPS  240
VTPPRSLDLV NAFGNNGEVI RSSFNGPTEA EKPLIIELAV AAMEEFIQMA QMGEPLWLPS  300
VDGRTNFLNE EEYVRLFPIG IGPKLEGFKT EASKDTAVVF LNPINLVEIL MDANKWSSMF  360
SSIVSTAVTV DVLSTGVVGN FNGALQLIFA EFQVPFPQVP TRDCYFVRYC KRSVDGIWAV  420
VDVSLDYLRA TPTASCRRRP SGCLIQAMPN GYSKVTWIEH VEADDIAIYN IYKPLLNSGL  480
AFGAKRWIAT LDRQCERLAS AMATNLPDDN MSNMILGGPE GRRNVLKLAE RMVISYCSGV  540
SATAAHQWTT LSGSGSENDV RIMFRKSIND PGRPPGIVMC AATTFWLPIS PKIVFDFLRD  600
ENTRTEWDIL SNGGVTQRLV HIANGREKGN SVSILRVNSS ANSTQNNMLI LQESSRDPTG  660
SFVVYAPVDV PAMNTVINGG DPDYVALLPS GFAILPDGPP GRIAGGSLLT IAFQILVDSV  720
PTSKLSLGSV ATVNRLIACT VDKIRAALLS DTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein