PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT00635
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 372aa    MW: 43607.5 Da    PI: 6.3318
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT00635genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.19.8e-2399180179
  trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstc 79 
               +Wt+++v++Li+a+++++e++ ++    kk++W+++s++m+erg ++sp+qC++k+++lnk++k+++++ +++t + ++++ 
  OIT00635  99 KWTDEMVKLLITAVSYIGEDVWSNGifPKKGKWRAISNAMAERGHHVSPQQCEDKFNDLNKKFKRLNDILGRGTaCCVVENP 180
               7*******************99876569*******************************************99535555555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MQVNHQQSNS PNQGSGDLQH ALEGAASFGF SNMHDMNQQV LSLDAIETSR LNVYEAYNER  60
SDDVEEVTVR REEKPPVVYR RTRWKMNKEK QPVVYSRMKW TDEMVKLLIT AVSYIGEDVW  120
SNGIFPKKGK WRAISNAMAE RGHHVSPQQC EDKFNDLNKK FKRLNDILGR GTACCVVENP  180
GLMEMMDLTH DAQEEVKKLL SSKQLFYQEL CSYNNQNRLF LPDDRELQQS VLLSLKRKDR  240
YEPEYVVQDM PAKRKIVGEE RISSVICAFI NSDCNVLNPN SNGIHDYTNN DEAETLQNEQ  300
QIMHQLLQLE EQKLQIQAQI LELEKQRVKC MRFRRREDRE LQELKLENKA MMLENKRMEL  360
QLKRCETSLQ TE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.13e-61Trihelix family protein