PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT00329
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 730aa    MW: 80134.6 Da    PI: 5.8472
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT00329genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.2e-1859114156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++ +++t+ q++e+e++F+++++p+ ++r+eL k+l L+  qVk+WFqN+R+++k
  OIT00329  59 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKELGKRLALEPLQVKFWFQNKRTQMK 114
               688999***********************************************998 PP
2START221.23.2e-692484681206
               HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
     START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
               ela +a++el+++a+ +ep+W +s+    e + ++e++++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +a    +a+tlev+s+g
  OIT00329 248 ELAVAAMEELIRMAQTGEPLWISSPdnstETLCEEEYVRTFPRGIGpkplgLKSEASRESAVVIMNHINLVEILMDVN-QWSSVFAglvsRAMTLEVLSTG 347
               57899********************998888899*********999********************************.********************** PP

               ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
     START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
                     galq+m+ae+q++splvp R+ +fvRy++ + +g+w++vdvS+d+ ++ ++     R++++pSg+li++++ng+skvtw+eh+++++r +h+++r
  OIT00329 348 vagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKHHADGTWAVVDVSLDNLRPTST----SRCRRRPSGCLIQELPNGYSKVTWIEHIEVDDRAVHNIYR 444
               ******************************************************875....9*************************************** PP

               HHHHHHHHHHHHHHHHHTXXXXXX CS
     START 183 slvksglaegaktwvatlqrqcek 206
               +lv+sgla+gak+wvatl+rqce+
  OIT00329 445 PLVNSGLAFGAKRWVATLDRQCER 468
               **********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    
MFQPNMFESH HHLLDMSHKS PENELDLIPD DEFDTKSGTD IMENPSGDDQ DPNQRPNKKK  60
RYHRHTQLQI QEMEAFFKEC PHPDDKQRKE LGKRLALEPL QVKFWFQNKR TQMKAQHERH  120
ENSQLRNENE KLRAENIRYK EALSNATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPMVNYPNLP STGSTRTLDL GVGSFGPQTG LVGEMYSASD LLRSVSGPTD  240
ADKPIIIELA VAAMEELIRM AQTGEPLWIS SPDNSTETLC EEEYVRTFPR GIGPKPLGLK  300
SEASRESAVV IMNHINLVEI LMDVNQWSSV FAGLVSRAMT LEVLSTGVAG NYNGALQVMT  360
AEFQVPSPLV PTRENYFVRY CKHHADGTWA VVDVSLDNLR PTSTSRCRRR PSGCLIQELP  420
NGYSKVTWIE HIEVDDRAVH NIYRPLVNSG LAFGAKRWVA TLDRQCERLA SAMANNIPTG  480
DIGVITSPEG RRSMLKLAER MVMSFCAGVG ASTAHTWTTL SGSGADDVRV MTRKSIDDPG  540
RPPGIVLSAA TSFWLPVPPK RVFDFLRDEN SRSEWDILSN GGLVQEMAHI ANGRDPGNCV  600
SLLRVNSGNS SQSNMLILQE SSTDSTGSYV IYAPVDIVAM NVVLSGGDPD YVALLPSGFA  660
ILPDGSTSSH CGGNSVAEVG NGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIKCTVER  720
IKTAVACDNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein