PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT00169 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 210aa MW: 23719.8 Da PI: 8.0639 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.1 | 4.6e-23 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++ rq t+skR+ i KKA+EL vLCd++va+++fs+tg+l yss OIT00169 9 KKIENSTSRQQTYSKRKDSIVKKANELAVLCDTDVALLMFSPTGQLTSYSS 59 68***********************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MGRNKLVMKK IENSTSRQQT YSKRKDSIVK KANELAVLCD TDVALLMFSP TGQLTSYSSR 60 GSVEDIMLRV VNRPGELHRR PIPNEQHFSQ RLTQLKYESE MVEKIAIAEA HEEKLNKLNQ 120 RLSEARENIR YYEPQVEYIN SVHEAVACQQ FLMGAMGRIQ QVKAKLLGGE VLQRNENVEM 180 ASVTTDDTAA AANGSSSSNP NWNSVRDESC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77950.2 | 8e-30 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT00169 |