PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS99970

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 484aa MW: 53761 Da PI: 6.7061

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS99970	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.1	2.8e-17	304	350	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ellP++ +K +Ka++L +A+eY+ksLq OIS99970 304 VHNLSERRRRDRINEKMKALQELLPHS-----TKTDKASMLDEAIEYLKSLQ 350 6***********************9.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MNPCLPEWNI EAELHVPHQK KPMGFDHELV ELLWRNGEVV LHSQKHKKQQ GYDPNECRQF 60 NKHDQQTIRD VVSCGNHTNL IQDDETISWL DCPIDESFEK EFCSPFLSEI STNPLETDKS 120 IRQSEDNKAF KFDPLEINHI FPHSHHSSFD PNPMPPPRFH NSVSAQKSVR NNVKEGSVMT 180 VGSSHCGSNQ VAIDADTSRF SSNANIGLSA AMITDYTGKV TPQSDTMDRD TFEPANTSSS 240 GGSGSSYART CNLSAATNSQ SLKRKSRDGE EPECQSKAGE LEPAGGNKSA QKSGTARRSR 300 AAEVHNLSER RRRDRINEKM KALQELLPHS TKTDKASMLD EAIEYLKSLQ MQLQMMWMGS 360 GMASMMLPGV QHYMSRIGMG MGPPTVPSIH NAMHLATLPL VDSTIPLNPA APNQAAMCQN 420 SMLNSVNYQR HLQNPNFQDQ YASYMGFHPL QGASQQMNIF GLGSQTAQQS QQLPHPTNTN 480 APNS

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MNPCLPEWNI EAELHVPHQK KPMGFDHELV ELLWRNGEVV LHSQKHKKQQ GYDPNECRQF  60
NKHDQQTIRD VVSCGNHTNL IQDDETISWL DCPIDESFEK EFCSPFLSEI STNPLETDKS  120
IRQSEDNKAF KFDPLEINHI FPHSHHSSFD PNPMPPPRFH NSVSAQKSVR NNVKEGSVMT  180
VGSSHCGSNQ VAIDADTSRF SSNANIGLSA AMITDYTGKV TPQSDTMDRD TFEPANTSSS  240
GGSGSSYART CNLSAATNSQ SLKRKSRDGE EPECQSKAGE LEPAGGNKSA QKSGTARRSR  300
AAEVHNLSER RRRDRINEKM KALQELLPHS TKTDKASMLD EAIEYLKSLQ MQLQMMWMGS  360
GMASMMLPGV QHYMSRIGMG MGPPTVPSIH NAMHLATLPL VDSTIPLNPA APNQAAMCQN  420
SMLNSVNYQR HLQNPNFQDQ YASYMGFHPL QGASQQMNIF GLGSQTAQQS QQLPHPTNTN  480
APNS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	309	314	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59060.4	5e-49	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIS99970