PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS99639
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 714aa    MW: 78193.9 Da    PI: 5.9633
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS99639genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.45.4e-863537133374
      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
               ++++++ e + +g++++aq +Larl+++ sp+g+p++R+a+yf+eAL+   +   + ++ ++pp+  ++ + + ++ a+k+fsevsP+++f ++t Nq+Il
  OIS99639 353 DQIFQASELLLAGQFSNAQMILARLNQQLSPNGKPFKRAAFYFKEALQLPFLL--PCTSTSFPPRIPTPFDCVLKMDAYKAFSEVSPLIQFMNFTSNQTIL 451
               57899999999*************************************99998..7777889****9999******************************* PP

      GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dleleeLrvkpgEal 202
               ea+  ++++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+  ++e L+ fA+ +g++fe +v+  ++++  +  l++Lr ++ Ea+
  OIS99639 452 EALGDAKQIHIIDFDIGCGAQWSSFMQELPSSNRKATSLKITAFVSPSTHHSVEIGIMHESLTLFANDVGIRFELEVINLDSFDpkTYPLSSLRSSECEAI 552
               *****************************************************************************9777654115678999******** PP

      GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvaceg 302
               a+n+ +   +      +     +++L+++k+lsPkvvv  e+ +++++ ++ +++l+al+yy  l+ s+ +a+   + +  +k+Er ll+ +i+n+v  + 
  OIS99639 553 AINFPIWSISSC--LFA----FPSLLHCMKQLSPKVVVSLERGCERTELPLKHHLLHALQYYEILLASIdAAN--LTPDVGKKIERSLLQSSIENMVLGRL 645
               ****99555444..344....456*********************************************5555..4778999****************998 PP

      GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               ++      ++  Wr+ + +aGF+pv++s+ ++ qa++l++++++ g++ve+++ slvl+Wk+r+L+s+ +Wr
  OIS99639 646 RS----PDRVPPWRNLFASAGFSPVAFSNLTEIQAECLVKRTQVGGFHVEKRQSSLVLCWKQRELLSALSWR 713
               88....9999*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    
MIVIPQSNNL AGAKGVLGVS SYVPSISSSP EAAICNKGLN FTRNESVSVL DTRSPSPSAS  60
SSSCSYGGQY AGNNGVPGDG AEKIDGRKEE LVTELQPFSF GLEPEKFNLG FGDLDNLLPE  120
LAGSDQTIFR WISGDMEDPS VSLKQLLQGG NANADLGCGV SVAGSFACAD NISFSSSDIS  180
LDANIEKIGS VVIDSNNKPN NSFENLNVNL LAKSLPPSLS FQEQQSEQKP QISCPQIMAN  240
QTQFQNSAYV NLFGSSSYNM NQEQPPTKRH NSGILGSSLG FLLPKVPFFN PSGDLLLRKQ  300
PLGQIQQQVN LLPPHQFQPT TLFVPKLEAA GGGGDGNLVV PRHQQQEQQF IYDQIFQASE  360
LLLAGQFSNA QMILARLNQQ LSPNGKPFKR AAFYFKEALQ LPFLLPCTST SFPPRIPTPF  420
DCVLKMDAYK AFSEVSPLIQ FMNFTSNQTI LEALGDAKQI HIIDFDIGCG AQWSSFMQEL  480
PSSNRKATSL KITAFVSPST HHSVEIGIMH ESLTLFANDV GIRFELEVIN LDSFDPKTYP  540
LSSLRSSECE AIAINFPIWS ISSCLFAFPS LLHCMKQLSP KVVVSLERGC ERTELPLKHH  600
LLHALQYYEI LLASIDAANL TPDVGKKIER SLLQSSIENM VLGRLRSPDR VPPWRNLFAS  660
AGFSPVAFSN LTEIQAECLV KRTQVGGFHV EKRQSSLVLC WKQRELLSAL SWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-97GRAS family protein