PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS99620
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 315aa    MW: 36430.1 Da    PI: 7.1625
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS99620genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.51.6e-1167144290
      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
               fY+e+A+  GFsv k++s+k+   g + ++  +C    + ++ k +         ++  +Cka+l   ++++g w+v+k++++HnHel 
  OIS99620  67 FYKEHARLRGFSVIKRNSNKK--GGDTARYITYCRDRTRIRKIKFT---------TKSNNCKARLAAVLDDSGCWRVSKVVHNHNHELL 144
               9***************99988..66677887788766555554444.........67889***************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
IVHLDDDDEE ADGEYHGEAN DDEEKVLGNE LELCVDREME NEFTEEDVVV GPISGMRFRD  60
KDTLFAFYKE HARLRGFSVI KRNSNKKGGD TARYITYCRD RTRIRKIKFT TKSNNCKARL  120
AAVLDDSGCW RVSKVVHNHN HELLQSVLRL MAGHRSVCDS LKRDLVAHDR SGIRPSKNIR  180
LAEVQRGGPQ NLGCTPKDCR NYILKSSNFE MQEGDTQSLL NFFREIQVKD REFFYSIDVD  240
NIGRLRNVIW VHSHCKAAYE QFHDAICFDT TYLVNRYNMP CASFVGINHH RQSILLGCAL  300
MSHEDINSYK LVFRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-40FAR1 family protein