PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIS99268 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 135aa MW: 15249.7 Da PI: 11.3731 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.8 | 7e-19 | 15 | 59 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 +i+n++n q +fskR +g++KKA+EL++L +aeva+++fs k+ OIS99268 15 KIQNERNLQASFSKRHAGLFKKASELCTLSGAEVALVVFSRATKF 59 599*************************************98876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence |
MGRKSNGRKK VDMVKIQNER NLQASFSKRH AGLFKKASEL CTLSGAEVAL VVFSRATKFT 60 RLATPLWILV MDRFLAGNSP PNIDVPNQLI EAHRNASVRE VNMEEMIDKE GRLEMARRRG 120 EVLQGIRRGA TSDKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-29 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIS99268 |