PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS98994
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 365aa    MW: 38823.7 Da    PI: 8.1688
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS98994genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.1e-11298343655
               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++I+ Lq
  OIS98994 298 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIRTLQ 343
               689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MYPSSTSSSS QNSMSHSTTA GGGSHGGGGL TRYGSAPGSF LTTAVESVIG ANNHDFNLHG  60
SHHQHLGPSR YYSPNMASSN SLNSESTSKA KEQSSLQRSI GFNDLTIGGG GGSGGGGCGV  120
MPAANSTTPL VRHSSSPARF LNQLAAAAGD TVSMGRGSYN TKGVADSGRG ITRLNSQLSF  180
TRQEALSQIA EENEDIEGTS TDNGHRKSTH SYATASSFAM GSWEDNNSIM FSVTPSKRAK  240
HTSNDIVNGL DDGETQFQFG LSQTALEMAS MDRLLHIPED SVPCKIRAKR GCATHPRSIA  300
ERERRTRISG KLKKLQDLVP NMDKQTSYAD MLDLAVQHIR TLQDQVQNLN VELENCKCGC  360
KKSSQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.17e-71bHLH family protein