PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS98983

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 492aa MW: 54642.6 Da PI: 6.3965

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS98983	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.4e-09	308	355	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq OIS98983 308 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 355 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MEKGNLFIND SNTTMGNYGL EIQENEQIQN CFFNPNWENS DPFESALSSM VSSPNANIPN 60 GSSTNNSSGD NFVLRELIGR LGSICNSREL SPNSNMINNS STNNSCYSTP LNSPPKLNLS 120 MRGNLSHNQL PQFSADPGFA ERAARFSCFA NKTFKSFNEA ELLQHNRQIV AQPNLESGKL 180 SRVSSNQSIK VSSGSQIQEF KDVNLVPKNS ELGDSRENSS VSEQIPVGEN DTNSRKRKSI 240 SKGKSKNANV SLGKNESNAK RSKSEENNGN DKAKEEEKAA EKEEEKAVPE PPKDYIHVRA 300 RRGQATDAHS LAERVRREKI SERMKLLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF 360 LSMKLATVNP RMDFNMEALL SKDMFQSRGS LAQNMYSSET SAQAFPYGFQ SQPGQNFHKG 420 TEFPFPINSL NNNLARNSNM LLPSLDGYVE STPQVPTFFE DDLNSVVQMG FGQNQNQSYP 480 GNVPISQMKV EL

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MEKGNLFIND SNTTMGNYGL EIQENEQIQN CFFNPNWENS DPFESALSSM VSSPNANIPN  60
GSSTNNSSGD NFVLRELIGR LGSICNSREL SPNSNMINNS STNNSCYSTP LNSPPKLNLS  120
MRGNLSHNQL PQFSADPGFA ERAARFSCFA NKTFKSFNEA ELLQHNRQIV AQPNLESGKL  180
SRVSSNQSIK VSSGSQIQEF KDVNLVPKNS ELGDSRENSS VSEQIPVGEN DTNSRKRKSI  240
SKGKSKNANV SLGKNESNAK RSKSEENNGN DKAKEEEKAA EKEEEKAVPE PPKDYIHVRA  300
RRGQATDAHS LAERVRREKI SERMKLLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF  360
LSMKLATVNP RMDFNMEALL SKDMFQSRGS LAQNMYSSET SAQAFPYGFQ SQPGQNFHKG  420
TEFPFPINSL NNNLARNSNM LLPSLDGYVE STPQVPTFFE DDLNSVVQMG FGQNQNQSYP  480
GNVPISQMKV EL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	234	239	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	5e-80	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIS98983