PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS98736
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 295aa    MW: 34393.6 Da    PI: 8.3671
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS98736genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.2e-183481148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
         OIS98736 34 RGPWTVEEDFTLINYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 81
                     89********************************************97 PP
2Myb_DNA-binding48.22.5e-1587130146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg  T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++
         OIS98736  87 RGTITLEEQLVILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 130
                      7888******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MDYHHVKVGL SRGGNYNKNN NHQQQHEKDM DLRRGPWTVE EDFTLINYIA HHGEGRWNSL  60
ARCAGLKRTG KSCRLRWLNY LRPDVRRGTI TLEEQLVILE LHSRWGNRWS KIAQHLPGRT  120
DNEIKNYWRT RVQKHAKQLK CDVKSKQFKD TMRYLWMPRL VERIQAAAAN TTNQVTINPN  180
MCMSEVVPIH NNNNAINKPR MSENYSISTA ASSENSFGTP VSDLTDCCYN YPPVISNNQQ  240
DYFQQSTQLE ESLTIPTATG LEFHAAMDQQ NMSQWMDGGN FSDNLWNIED MWFIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.13e-89MYB family protein