PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIS98724

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 467aa MW: 53389.6 Da PI: 5.0596

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS98724	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.5	1.1e-25	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +ie+ +nrqvtfskRrngilKK +ELSvLCd++va+i+fs++g+l ys OIS98724 10 KIESLTNRQVTFSKRRNGILKKIYELSVLCDIDVAIIMFSPSGRLTHYS 58 59********************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MGRSKLPLLK IESLTNRQVT FSKRRNGILK KIYELSVLCD IDVAIIMFSP SGRLTHYSRK 60 RRIEDVLSEL VNLPDSERGF YINNKESVLW NLRKIEIQDK FCDIERISPA YLNTSDTTKK 120 IQEEINGLHC KLDEAEGLLR IFEPDTKKIT SLHELDLCEK RLQVALNQVR QRMEQLSSNH 180 NTSSYEDNME QINALLQYID NTQTEDTNPS LEEPPYDLWL ELEDYSYTNY INENNNCNLY 240 AASETSSLTQ SSMNLPSPII YDAMSQTSIS GVSNYHKEGT FSSRTDENFK QSQHSTRTFP 300 TLTLQTSFKF AKPEMETPTS ALRPVAPYLQ VEATAASSQQ PSSSNYYKEN NELDCRFQPK 360 VTTSNYQMSQ TSTAEGSFSS LTDENFKQSQ CSTRVFPPIT PLQTSFSFAT PEMETPTSAL 420 RPVAPYLQAE AAASPNQQLP SNNIEEENHE ISWFQPQMKK SKYHHLA

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MGRSKLPLLK IESLTNRQVT FSKRRNGILK KIYELSVLCD IDVAIIMFSP SGRLTHYSRK  60
RRIEDVLSEL VNLPDSERGF YINNKESVLW NLRKIEIQDK FCDIERISPA YLNTSDTTKK  120
IQEEINGLHC KLDEAEGLLR IFEPDTKKIT SLHELDLCEK RLQVALNQVR QRMEQLSSNH  180
NTSSYEDNME QINALLQYID NTQTEDTNPS LEEPPYDLWL ELEDYSYTNY INENNNCNLY  240
AASETSSLTQ SSMNLPSPII YDAMSQTSIS GVSNYHKEGT FSSRTDENFK QSQHSTRTFP  300
TLTLQTSFKF AKPEMETPTS ALRPVAPYLQ VEATAASSQQ PSSSNYYKEN NELDCRFQPK  360
VTTSNYQMSQ TSTAEGSFSS LTDENFKQSQ CSTRVFPPIT PLQTSFSFAT PEMETPTSAL  420
RPVAPYLQAE AAASPNQQLP SNNIEEENHE ISWFQPQMKK SKYHHLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	7e-45	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIS98724