PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIS98632

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 992aa MW: 110526 Da PI: 7.9683

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS98632	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.4	2.7e-40	135	212	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ k+yhrrhkvC+vhska+ +lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ OIS98632 135 ICQVEDCQADLSNSKDYHRRHKVCDVHSKAARALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 212 5**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence
MEAKFGGKIQ HLYGKRSMEW DLNDWKWDGD LFTAAPLSSM PFDCQSKQQV TTAGVVSNTL 60 SSGSDEMASG TGRKELEKRR RSVSVVVSED DEVASLNLKL GGQLYPIMER EEEEKWQGKS 120 GKKSKVAGAS SNRAICQVED CQADLSNSKD YHRRHKVCDV HSKAARALVG NVMQRFCQQC 180 SRFHVLQEFD EGKRSCRRRL AGHNKRRRKT HPENVANGAS MNYERGSSYL LISLLRILAN 240 IHSNSADQSK DQDLLSHLLR NLASLASTAN ERNVPGLLSA SPDRQNTGTS GWFCIKDSPQ 300 PTGQCLSIPA PEVRDKRMDT NGADCEIPQN CCAPQPEYMY HRKESLPTNA NVSATSLAGV 360 KLSNIDLNNS YDDPQDGIGK LHYPNATVNL GNASPGCPLW LCEEPHKSSP TKISGKSGST 420 SNFSPSNSSG EAQSRTDRIV FKLFGKDPTD FPTTLRKQIL DWLAHSPTDI ESYIRPGCII 480 LTIYLRMDKS RWEELYCDLR SGLTKLLNAS TDSFWRTGWV YTRVQHRVAF IFNGQVVLDT 540 PLSVKSHRNC RISIIKPLAT SVSEGVQFLV KGFNLSRPTT RLLCAMEGKY LVQGSCADMM 600 GAGDSYMEHE EIQSLGFPCI MPNITGRGFI EVEDHGLCSS FFPFIVAEKD VCSEIRTLES 660 IIEAAETADG FLGATEELQA RDQALDFIHE MGWLLHRSHL QFRLGSGSNL ILFPFERFKW 720 LIEFSVDHAW CAVVEKLLSI FFNGIVDVGQ HSSLDIALRE LGVLHRAVRG NRRSMVEMLL 780 RYCPHRVLDK SGVEKKQGHG GYLFRPDSEG PGGLTPLHIV ASQDGCESLL EALIDDPGQI 840 GIEAWRSARE STGLTPNDYA SLQGHYSHIH VVQKKINENS GSGHVVVNIP GTLLNSSFKQ 900 KLEDDQKLVK VVSLQTEKPL SKPIQRHCRQ CEQKFSYGNM GKTRVAIYRP AMLSMVAVAA 960 ICVCVALLFK SSPEVLYVFK PFRWEQLKYG SS

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence

MEAKFGGKIQ HLYGKRSMEW DLNDWKWDGD LFTAAPLSSM PFDCQSKQQV TTAGVVSNTL  60
SSGSDEMASG TGRKELEKRR RSVSVVVSED DEVASLNLKL GGQLYPIMER EEEEKWQGKS  120
GKKSKVAGAS SNRAICQVED CQADLSNSKD YHRRHKVCDV HSKAARALVG NVMQRFCQQC  180
SRFHVLQEFD EGKRSCRRRL AGHNKRRRKT HPENVANGAS MNYERGSSYL LISLLRILAN  240
IHSNSADQSK DQDLLSHLLR NLASLASTAN ERNVPGLLSA SPDRQNTGTS GWFCIKDSPQ  300
PTGQCLSIPA PEVRDKRMDT NGADCEIPQN CCAPQPEYMY HRKESLPTNA NVSATSLAGV  360
KLSNIDLNNS YDDPQDGIGK LHYPNATVNL GNASPGCPLW LCEEPHKSSP TKISGKSGST  420
SNFSPSNSSG EAQSRTDRIV FKLFGKDPTD FPTTLRKQIL DWLAHSPTDI ESYIRPGCII  480
LTIYLRMDKS RWEELYCDLR SGLTKLLNAS TDSFWRTGWV YTRVQHRVAF IFNGQVVLDT  540
PLSVKSHRNC RISIIKPLAT SVSEGVQFLV KGFNLSRPTT RLLCAMEGKY LVQGSCADMM  600
GAGDSYMEHE EIQSLGFPCI MPNITGRGFI EVEDHGLCSS FFPFIVAEKD VCSEIRTLES  660
IIEAAETADG FLGATEELQA RDQALDFIHE MGWLLHRSHL QFRLGSGSNL ILFPFERFKW  720
LIEFSVDHAW CAVVEKLLSI FFNGIVDVGQ HSSLDIALRE LGVLHRAVRG NRRSMVEMLL  780
RYCPHRVLDK SGVEKKQGHG GYLFRPDSEG PGGLTPLHIV ASQDGCESLL EALIDDPGQI  840
GIEAWRSARE STGLTPNDYA SLQGHYSHIH VVQKKINENS GSGHVVVNIP GTLLNSSFKQ  900
KLEDDQKLVK VVSLQTEKPL SKPIQRHCRQ CEQKFSYGNM GKTRVAIYRP AMLSMVAVAA  960
ICVCVALLFK SSPEVLYVFK PFRWEQLKYG SS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	211	KRRRKTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein

Link Out ? help Back to Top
Ensembl	OIS98632