PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS98569
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 359aa    MW: 40810.3 Da    PI: 6.5108
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS98569genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS246.51.1e-75335513374
      GRAS  13 ssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl....fsevsPilkfshltaNqaIleave 107
               s+++ e+a++lL   +  asp+g+p+qR++ +f eAL++r+ +++     +lpp++ +ek   ++e+l   k      s+ s ++ + +++  qaIl+ ++
  OIS98569   3 SKRHYERATELLRLCNLSASPTGNPVQRVVYCFSEALRERIDKEMG----TLPPKAGEEKPfdMEEVLLTPKPfifvCSQSSSFFHVPQFAGIQAILDNLK 99 
               6778899************************************333....33444333332325555555444343468999******************* PP

      GRAS 108 geervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf.AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlv 207
               +++rvH iD++i+ G +Wp L+qaL +   +   l+iT+vg     ske++ee+g+rL++f Ae+++ pf+f++ v+++++dl+ + ++++  Ea aV + 
  OIS98569 100 SATRVHLIDIGIKSGSHWPILMQALPN---QLEILKITAVGT----SKEMVEEIGRRLSSFvAENMKFPFSFKA-VVSEMKDLSNDLFELDASEAAAVYSE 192
               *************************66...6778********....*************98799**********.7999********************** PP

      GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
               ++l  +l+++ +le     vL l+ks++P v+vv++ ea++n++ F++ f eal+ y+alfd le+ + r+++ r++ E  ++++ i+n+++ceg++r+ r
  OIS98569 193 YRLGGMLASPNHLEA----VLTLIKSINPCVMVVIDTEANTNTPIFVDCFNEALYLYAALFDVLEVCMRRDNQYRMTFEGLFIRKIIRNMITCEGEDRTCR 289
               *******88877777....********************************************************************************** PP

      GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveeesgslvlgWkdrpLvsvSaWr 374
               + +l+ Wr+ +e++G k+ +lse+    a+l+  k + +g  +++ + + l+  Wk+ p++++SaW+
  OIS98569 290 NVRLQVWRDLFEKFGIKETKLSESSLYHANLMADKSA-HGfCTLDMDGKGLIVKWKETPIIFASAWK 355
               *********************************9999.55268889999999**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MFSKRHYERA TELLRLCNLS ASPTGNPVQR VVYCFSEALR ERIDKEMGTL PPKAGEEKPF  60
DMEEVLLTPK PFIFVCSQSS SFFHVPQFAG IQAILDNLKS ATRVHLIDIG IKSGSHWPIL  120
MQALPNQLEI LKITAVGTSK EMVEEIGRRL SSFVAENMKF PFSFKAVVSE MKDLSNDLFE  180
LDASEAAAVY SEYRLGGMLA SPNHLEAVLT LIKSINPCVM VVIDTEANTN TPIFVDCFNE  240
ALYLYAALFD VLEVCMRRDN QYRMTFEGLF IRKIIRNMIT CEGEDRTCRN VRLQVWRDLF  300
EKFGIKETKL SESSLYHANL MADKSAHGFC TLDMDGKGLI VKWKETPIIF ASAWKFHNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.17e-47GRAS family protein