PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS98410
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 326aa    MW: 37026.8 Da    PI: 7.1164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS98410genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-09179226455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  OIS98410 179 SHSLAERARREKISKKMKCLQDLVPGC----NKVIGKAGMLDEIINYVQSLQ 226
               8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MLGCEEMSIL ERQRAIFERL YQCQQQLSSL PNQNLAQFNS LISEHIMDCS QVQNFPIKID  60
PQMDENSHSL NMFGREQKNW AGSDFTDNSL ELARQSLSTH SNSSITRTST KKRKTEFYEE  120
NDCKARKLEG EAGEVKSEIT VKSEKGNSGN NSKENSKISE VKKPDYIHVR ARRGQATDSH  180
SLAERARREK ISKKMKCLQD LVPGCNKVIG KAGMLDEIIN YVQSLQKQVE FLSMKLAASN  240
LNTDNLFAKE FPSHMANFAN PTCLQNNLFQ QQQEGSNIGV ATMLPQRRED CLMSFPEAFL  300
DSSHVPAVQQ LPNFENDLQC LFGIRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.13e-48bHLH family protein