PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS98215
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 347aa    MW: 38112.7 Da    PI: 8.3703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS98215genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.3e-13280325655
               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  OIS98215 280 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 325
               689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MDSEFDKNQN MNSGLLRFRS APSSLFENFT DGVIKIENFG SENKGFDLAG LNNQLVSQNS  60
QLPPQYPRQN TSANVGSMDG GGYRVMGSLG NNHERQNKLA SNLMRQNSSP AGLFSHLNSQ  120
IGYGTLKGGG GGGYRMANGG TVDSSPSSSR LKGHFSSLPS GAPSSLGMLS RILEVDNESS  180
ITTVPDDDKC RDGNSEAQFC NMGFPFTSWN DSPQLDNEGK LFANADQIEE VGNRPPILSH  240
HLSLPKTPAE IAAIEKLLHF QDTIPCKIRA KRGCATHPRS IAERVRRTRI SERMRKLQEL  300
VPNMDKQTNT ADMLDLAVEY IKDLQKQYKT LTDHRANCKC SAMQKPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-64bHLH family protein