PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIS97917

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 280aa MW: 31172.7 Da PI: 8.9653

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS97917	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.6e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l++++ ++G+g +W + +++ g++R++k+c++rw++yl OIS97917 14 RGPWSPEEDAKLKEYIDKYGSGgNWISLPQKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	39.5	1.3e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd + + ++ G++ W+ Ia+ ++ gRt++++k++w++ OIS97917 69 GEFSDEEDRVICSLYAKIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MGRAPCCDKG NVKRGPWSPE EDAKLKEYID KYGSGGNWIS LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRVIC SLYAKIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMKS 120 LVSNSSQQIK EIHKTTCHSS ISPLQANSSL VSSLYSSPSP ALSSKTTTYE YTNSHFYPIS 180 AATNFPGNKA IYSTPSSNFL STPSCSSGGE NWVSYLYNGV DEKQNNSNFS ITNGSTTNSY 240 AEGKPSGKGS YDEENQLECS LEEIKQLIST TTIYNNFFHA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	4e-73	MYB family protein

Link Out ? help Back to Top
Ensembl	OIS97917