PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS97800

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 650aa MW: 74064.6 Da PI: 8.8868

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS97800	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	462	503	2	40
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W++eE +ll ++ ++++g +W+ I++++g+gRt +++ OIS97800 462 KPWSKEEIDLLRKGMLKYPKGtsrRWEVISEYIGTGRTVEEI 503 69************************************9886 PP
2	Myb_DNA-binding	27.8	5.8e-09	594	637	4	45
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ ++ lv+a k ++++ +W+++a ++ g+t +qck ++ OIS97800 594 WSAVQEKALVQALKTFPKEtsqRWERVATAVP-GKTMNQCKKKFA 637 ******************************.******9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MASRSSIRLI SYSEELINGE PIYISSNCFP IKALKYEPAG LSFHSAALRL SGHVEKEVSK 60 DSKEDVPTEK EQSFTYSSES YSSKGKKKSS TGEKVQDHYA LLGLSHLRYL ASEDQIRKSY 120 RDAALRHHPD KLASLLLAEE TEAAKQAKKE EIENHFKAIQ EAYEVLIDPV RRRIYDSTDE 180 FDDEIPTECA PQDFFKVFGP AFLRNGRWSV TQPVPSLGDE NTPIKEVDSF YNFWYSFKSW 240 REFPHADEFD LEQAESRDHK RWMERQNAKL SEKARKEEIA RIRTLVDNAY KRDPRILGRK 300 EAEKAEKQKK KEAKLLAKKL QEEEAARIAE EEKRKKEEEG KRAAEVALQQ KKLKEKEKKL 360 LRKERSRLRA LAAPVLSQHL LGLADDDIEG LCMSLDIEQL RNLCDKADGK DELMIAELLR 420 EALGHDHNLK YENKGEKSKS HQNGSLEGKR QVPLMSSEKR EKPWSKEEID LLRKGMLKYP 480 KGTSRRWEVI SEYIGTGRTV EEILKATKTV LLQKPDSAKA FDSFLEKRKP APTIASPLST 540 RAEVEGVENS SKPESESAKL ADSQESPSQN TNSQNTEDAP TANGVSSSSD SDIWSAVQEK 600 ALVQALKTFP KETSQRWERV ATAVPGKTMN QCKKKFALLK ENFRNKKGAV

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MASRSSIRLI SYSEELINGE PIYISSNCFP IKALKYEPAG LSFHSAALRL SGHVEKEVSK  60
DSKEDVPTEK EQSFTYSSES YSSKGKKKSS TGEKVQDHYA LLGLSHLRYL ASEDQIRKSY  120
RDAALRHHPD KLASLLLAEE TEAAKQAKKE EIENHFKAIQ EAYEVLIDPV RRRIYDSTDE  180
FDDEIPTECA PQDFFKVFGP AFLRNGRWSV TQPVPSLGDE NTPIKEVDSF YNFWYSFKSW  240
REFPHADEFD LEQAESRDHK RWMERQNAKL SEKARKEEIA RIRTLVDNAY KRDPRILGRK  300
EAEKAEKQKK KEAKLLAKKL QEEEAARIAE EEKRKKEEEG KRAAEVALQQ KKLKEKEKKL  360
LRKERSRLRA LAAPVLSQHL LGLADDDIEG LCMSLDIEQL RNLCDKADGK DELMIAELLR  420
EALGHDHNLK YENKGEKSKS HQNGSLEGKR QVPLMSSEKR EKPWSKEEID LLRKGMLKYP  480
KGTSRRWEVI SEYIGTGRTV EEILKATKTV LLQKPDSAKA FDSFLEKRKP APTIASPLST  540
RAEVEGVENS SKPESESAKL ADSQESPSQN TNSQNTEDAP TANGVSSSSD SDIWSAVQEK  600
ALVQALKTFP KETSQRWERV ATAVPGKTMN QCKKKFALLK ENFRNKKGAV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	356	KRKKEEEGKRAAEVALQQKKLKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	1e-122	MYB family protein

Link Out ? help Back to Top
Ensembl	OIS97800