PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS97734

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 341aa MW: 37871.8 Da PI: 8.2073

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS97734	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.2	5.8e-18	186	240	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k OIS97734 186 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 240 788899***********************************************98 PP
2	HD-ZIP_I/II	127.5	5.8e-41	186	276	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +lk OIS97734 186 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENKRLQKELQELR-ALK 276 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MELALSLGGD TPKSFLFLEK SSSSSSLHEK LMDSSKDLGF CMGLGKCSED KSRKNKQRRS 60 QDLKEGHESK GSSDPLLQLD LLPFSTVSRD TSSQLHFPWL TENIAGEPGP AGKVLDINRR 120 QLVAEETEEG AALSSPNSAI STFQVNFPIY RNENKLLGKR ECEGDHVERW GNSSSRASDE 180 EDGSARKKLR LTKEQSAFLE ESFKEHNTLN PKQKLALAKQ LNLRPRQVEV WFQNRRARTK 240 LKQTEVDCEY LKKCCETLTE ENKRLQKELQ ELRALKSSQP FYMQLPATTL TMCPSCERVV 300 TATSSAAAAS AAAAANTMLS LAKPEPFPFS PAQVQAPQAA S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	243	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-74	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIS97734