PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS97711
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 311aa    MW: 35310.3 Da    PI: 9.2505
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS97711genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-072468345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E + + +a +++ ++   +W ++a++++ g+t  +++  + 
         OIS97711 24 KWTPAENKAFENALALFDKDtpdRWQRVAEMVP-GKTVIDVIRQYK 68
                     8********************************.****99998876 PP
2Myb_DNA-binding45.12.4e-14139183347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
         OIS97711 139 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 183
                      7*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MEILSPAPYL SNSSWFLDEE KSTKWTPAEN KAFENALALF DKDTPDRWQR VAEMVPGKTV  60
IDVIRQYKEL EDDVSRIEAG LITIPGYTTT TTSSSSSPFT LEWGNSHNSF DGYKQSYVVG  120
GKRSLSNRPP EQERKKGIPW TEEEHKLFLM GLKKYGKGDW RNISRNFVIT RTPTQVASHA  180
QKYFIRQLSG GKDKRRASIH DITTINLNDN QTPSPDHQKP TSIDQSTVIS QQPKSADNAM  240
HKMPFQWSQV NNGFNYAEGS LFVSPPYGGN SYGDTKMQSQ SLQQRGAMRE PYFGSQSMNF  300
QLQSAQPYYH A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-100MYB_related family protein