PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIS97385

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 377aa MW: 42525.4 Da PI: 6.0705

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS97385	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.2	1.2e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl OIS97385 14 KGPWSPEEDAKLKAYIEENGTGnNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.8	2.1e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ OIS97385 69 GGFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MGRAPCCDKN NVKKGPWSPE EDAKLKAYIE ENGTGNNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 RKQSQMNRLL LASGGQDLKE TNGLEENSLF QNLSNSALER LQLHMQLQTL QNPLSFYNNP 180 ALWPKLTPLQ QKMIQTLQAN GINENQTPIF APINPSDHNQ AHELGQKVGI NEFANTMTNF 240 KANEVEKSNT NNGISSSDST PIESNNQRNV LDKNIGQENA REIQIQIQGV QGFTQAEIDD 300 LILNKGIGFN LPSENHQIAE FDCFKEMDDG SRDNLAWWSN EFDTNTASSS NSWGSSSNIL 360 QQTEGMYQDY AVGYNLQ

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MGRAPCCDKN NVKKGPWSPE EDAKLKAYIE ENGTGNNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
RKQSQMNRLL LASGGQDLKE TNGLEENSLF QNLSNSALER LQLHMQLQTL QNPLSFYNNP  180
ALWPKLTPLQ QKMIQTLQAN GINENQTPIF APINPSDHNQ AHELGQKVGI NEFANTMTNF  240
KANEVEKSNT NNGISSSDST PIESNNQRNV LDKNIGQENA REIQIQIQGV QGFTQAEIDD  300
LILNKGIGFN LPSENHQIAE FDCFKEMDDG SRDNLAWWSN EFDTNTASSS NSWGSSSNIL  360
QQTEGMYQDY AVGYNLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-97	MYB family protein

Link Out ? help Back to Top
Ensembl	OIS97385