PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96905

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 462aa MW: 51716.3 Da PI: 6.8783

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96905	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00036	87	104	2	19
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cg+ Fs++ ++ H OIS96905 87 VCENCGREFSSWKSFLEH 104 6**************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MACIDQEQQQ QQPVFKHYCR VCKKGFVCGR ALGGHMRAHG IGDEGANLDD DDPASDWEDK 60 FGGSVKGGNK RMYQLRTNPN RQKSNRVCEN CGREFSSWKS FLEHGKCSSE ESLVSSPCSE 120 GEEYIINGER KGYGWSKRKR SLRTKVGTLS TSTYPSSEED DLLLAKCLID LANARVDTSL 180 AEPEESCASA SKEEERARNP MTYLAPLVTT RIPLDNKAKG ASSKGLFECK ACKKVFNSHQ 240 ALGGHRASHK KVKGCYAAKQ DQLDDSLIDD QDMNITHDEF TLQASKSMRK SKIHECSICH 300 RVFSTGQALG GHKRCHWITS NSPDSSKYNF HSHMEQINLR SNLRKSGDAL DLNIPSHEDM 360 SRVRRDPMNP LSFEVSTEIH LHPWNTKDNS SDNYYLEEIK NNNDNNNNNN NSSTQNVEED 420 EADSKLKLAK LSELKDMNTS SENPSHWLQV GIGPTTEVGA DS

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MACIDQEQQQ QQPVFKHYCR VCKKGFVCGR ALGGHMRAHG IGDEGANLDD DDPASDWEDK  60
FGGSVKGGNK RMYQLRTNPN RQKSNRVCEN CGREFSSWKS FLEHGKCSSE ESLVSSPCSE  120
GEEYIINGER KGYGWSKRKR SLRTKVGTLS TSTYPSSEED DLLLAKCLID LANARVDTSL  180
AEPEESCASA SKEEERARNP MTYLAPLVTT RIPLDNKAKG ASSKGLFECK ACKKVFNSHQ  240
ALGGHRASHK KVKGCYAAKQ DQLDDSLIDD QDMNITHDEF TLQASKSMRK SKIHECSICH  300
RVFSTGQALG GHKRCHWITS NSPDSSKYNF HSHMEQINLR SNLRKSGDAL DLNIPSHEDM  360
SRVRRDPMNP LSFEVSTEIH LHPWNTKDNS SDNYYLEEIK NNNDNNNNNN NSSTQNVEED  420
EADSKLKLAK LSELKDMNTS SENPSHWLQV GIGPTTEVGA DS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	5e-26	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIS96905