PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96641

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 353aa MW: 40472.2 Da PI: 5.4258

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96641	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl OIS96641 14 KGLWSPEEDEKLYNYITKFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	51.2	3e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+++++++++ lG++ W+ Ia+ ++ gRt++++k++w++yl OIS96641 67 RGMFSQEEEDIILNLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNSYL 112 788*****************.*****.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MRRHSVFVKE KLRKGLWSPE EDEKLYNYIT KFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPNLKRGMF SQEEEDIILN LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS YLKKKLIKQG 120 IDPNTHKPLS ENQVRNETDC TEKASMLLIP QLPNMSISAN MEQPFHLSET SVDCEANRQL 180 TEASRNQLVS KQVFDPLFLF EFQANVDPSE YNSELLGQCQ QNLRPYDHQN QIEGNPNFGF 240 CSMPSLTNFE HGHMTETEFS DSSSSKMSIL YTSEAKESSS NSSNMNNHHN AAEIQMNEML 300 GNPQDLSWGS ENKIDSLFQY PYGGIKNEED FSNNPLSSLS EDTCGENLVF HHI

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MRRHSVFVKE KLRKGLWSPE EDEKLYNYIT KFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPNLKRGMF SQEEEDIILN LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS YLKKKLIKQG  120
IDPNTHKPLS ENQVRNETDC TEKASMLLIP QLPNMSISAN MEQPFHLSET SVDCEANRQL  180
TEASRNQLVS KQVFDPLFLF EFQANVDPSE YNSELLGQCQ QNLRPYDHQN QIEGNPNFGF  240
CSMPSLTNFE HGHMTETEFS DSSSSKMSIL YTSEAKESSS NSSNMNNHHN AAEIQMNEML  300
GNPQDLSWGS ENKIDSLFQY PYGGIKNEED FSNNPLSSLS EDTCGENLVF HHI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G57560.1	2e-75	MYB family protein

Link Out ? help Back to Top
Ensembl	OIS96641