PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS96235
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 277aa    MW: 31777.6 Da    PI: 5.6201
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS96235genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.7e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed +l++ +   G  +Wk +++  g+ R++k+c++rw +yl
         OIS96235 14 RGPWTIDEDHKLLNFILNNGIQCWKMVPKFAGLQRCGKSCRLRWINYL 61
                     89********************************************97 PP
2Myb_DNA-binding46.49.2e-1568110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       + ++ E+ +++++++ +G++ W++Ia++++ gRt++++k++w++
         OIS96235  68 EPLSEAEENQIIQLHACFGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      677999***************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MGRQPCCDKV GLKRGPWTID EDHKLLNFIL NNGIQCWKMV PKFAGLQRCG KSCRLRWINY  60
LRPDLKREPL SEAEENQIIQ LHACFGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKLLG  120
IDPLTHNPIE PLNLENLEQK PDETIIQSNM PTTHDHETEN SSTSSETKKT ETDIKTDDIT  180
NDFSVVDNEY SNLCGNLDVD LLSNTTKTMS YSLEIAESIN LSSASVATES SSNVVPAEGQ  240
DSIQQWFYSV DSLFSYGTTM SINMELEKTF FWRNYNH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-75MYB family protein