PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS96225
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 289aa    MW: 32566.5 Da    PI: 6.7149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS96225genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.2e-08168215455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  OIS96225 168 SHSLAERVRRGKINERLRCLQDIVPGC----YKSMGMAVMLDEIINYVQSLQ 215
               8*************************8....3569999***********998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MAYHLVNPDM QINNPSFSVF NTDSSLNFNN QFPQLDLNPT SLDMSNFNFQ SFVGFSHENI  60
LTQAPEFPVC LTENFHGNSQ EDDKNMVVHA MPTLTIQARN DINESKKRKS IETPESSSAY  120
SSPAVSWSGT NRKTSKGKGK KVKNDEKEED NPRQVVHVRA KRGQATDSHS LAERVRRGKI  180
NERLRCLQDI VPGCYKSMGM AVMLDEIINY VQSLQNQVEF LSMKLSAASI YNNFNSETDI  240
LETLQIAKAY EAHIMQKLRK EGCEGVSSSN QIGPLDHSFG CYPQLPYNT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106143KKRKSIETPESSSAYSSPAVSWSGTNRKTSKGKGKKVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.13e-56bHLH family protein