PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS96208
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 330aa    MW: 37152.8 Da    PI: 4.3203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS96208genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21e-11164207654
               HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
       HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  OIS96208 164 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 207
               589*********************66......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MEYYNENGFL EEVLLSWDTS TTLVPMEMTD FYNFESSNSV DIPLACASTT ITTTASNSFE  60
DYSYDLPFDH SLINSSFYSP FGDELSPPDL TDNTSSFPNS HEDFNSLLED EVGNCSFQNL  120
EMGNNVPCKL EQIQVSEAPC FNIGLCPERK TKSKKLDGQP SKNLMAERRR RKRLNDRLSM  180
LRSVVPKISK MDRTSILGDT IDYMKELVER INNLQEEMDL GPNQLSLLSI FKDVKPNEML  240
VRNSPKFDVE RRGVDTKVEI CCAGKPGLLL STVTTLEALG LDIQQCVISS FSDFSMQASC  300
SEEMEQRGLV NSEDIKQALF RNAGYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167174ERRRRKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-85bHLH family protein