PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIS96140

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 385aa MW: 44550.8 Da PI: 5.1473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96140	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	2e-09	143	186	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +i+ +++Y k+L OIS96140 143 LMAERRRRKRLNERLSMLRSIVPKiS------KMDRTSIVGDTINYTKEL 186 589*******************66......9999******998776 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MDNGFLLDEL LALRNDSWET YFPMEINDLY NNSWNYEYFA ENPIPIPLPC TTTTTTTSSF 60 EDYSNFPFDQ SLNSPLISEF YSTQLLGDEL SPLELTNSSN NWLDTPFTSQ LQDLEVGNFN 120 IGSLCPEKKV NTKKLNGQPS KNLMAERRRR KRLNERLSML RSIVPKISKM DRTSIVGDTI 180 NYTKELLAKI NNLQEEMELG PNQLSLMSIF MNEKPIEMFV RNSPKFDVER RSIDTRLEIT 240 CAGKSDLLLS TLTTLDALGL ETQQCVISCF TDFAMQASCS EVQGKVKAKK AAYLNLVESI 300 DEVEKRTNRE WYQKTKKEAK LTVTMAKTTT FGRLYEEVRE TSRDKKLYML AKMREMKARY 360 LDQVKCIKDE EGRVLIDDTQ ITRRW

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MDNGFLLDEL LALRNDSWET YFPMEINDLY NNSWNYEYFA ENPIPIPLPC TTTTTTTSSF  60
EDYSNFPFDQ SLNSPLISEF YSTQLLGDEL SPLELTNSSN NWLDTPFTSQ LQDLEVGNFN  120
IGSLCPEKKV NTKKLNGQPS KNLMAERRRR KRLNERLSML RSIVPKISKM DRTSIVGDTI  180
NYTKELLAKI NNLQEEMELG PNQLSLMSIF MNEKPIEMFV RNSPKFDVER RSIDTRLEIT  240
CAGKSDLLLS TLTTLDALGL ETQQCVISCF TDFAMQASCS EVQGKVKAKK AAYLNLVESI  300
DEVEKRTNRE WYQKTKKEAK LTVTMAKTTT FGRLYEEVRE TSRDKKLYML AKMREMKARY  360
LDQVKCIKDE EGRVLIDDTQ ITRRW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	153	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	3e-42	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIS96140